Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NVW

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(cyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 6)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2014-11-24
DetectorDECTRIS PILATUS 2M
Wavelength(s)0.9174
Spacegroup nameP 41 2 2
Unit cell lengths93.226, 93.226, 365.081
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.930 - 2.200
R-factor0.2032
Rwork0.201
R-free0.24890
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1vcb
RMSD bond length0.008
RMSD bond angle1.292
Data reduction softwareXDS
Data scaling softwareAimless (0.3.11)
Refinement softwareREFMAC (5.8.0073)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.93048.9302.240
High resolution limit [Å]2.20011.4302.200
Rmerge0.1410.0540.857
Rmeas0.1530.0600.924
Rpim0.0580.0250.342
Number of reflections82957
<I/σ(I)>8.6
Completeness [%]99.898.9100
Redundancy6.75.77.1
CC(1/2)0.9970.9980.837
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.4291PEG 3350, MgOAc, Sodium cacodylate, DTT

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon