5NV2
Human DNMT3B PWWP domain in complex with N-isopropyl-1,5-dimethylhexylamine (Metron S)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-12-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.978570 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 74.630, 74.630, 156.670 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.620 - 2.029 |
R-factor | 0.2032 |
Rwork | 0.201 |
R-free | 0.24050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qkj |
RMSD bond length | 0.008 |
RMSD bond angle | 1.102 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.620 | 2.150 |
High resolution limit [Å] | 2.029 | 2.030 |
Rmerge | 0.042 | 0.870 |
Number of reflections | 33473 | 5331 |
<I/σ(I)> | 26.76 | 2.38 |
Completeness [%] | 99.9 | 99.2 |
Redundancy | 9.8 | 9.9 |
CC(1/2) | 1.000 | 0.540 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.1 M MES,0.2 M Li2SO4, 23-33% PEG 3350 |