5NUV
Structure of the WD40-domain of human ATG16L1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-07-30 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9184 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 157.550, 38.220, 45.620 |
Unit cell angles | 90.00, 105.74, 90.00 |
Refinement procedure
Resolution | 43.909 - 1.550 |
R-factor | 0.1666 |
Rwork | 0.165 |
R-free | 0.19700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2cnx |
RMSD bond length | 0.009 |
RMSD bond angle | 1.108 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.909 | 43.909 | 1.650 |
High resolution limit [Å] | 1.550 | 10.000 | 1.550 |
Rmerge | 0.067 | 0.034 | 0.730 |
Rmeas | 0.073 | 0.037 | 0.792 |
Number of reflections | 38280 | 160 | 6488 |
<I/σ(I)> | 15.62 | 48.62 | 2.45 |
Completeness [%] | 99.8 | 97.6 | 99.6 |
Redundancy | 6.736 | 5.794 | 6.682 |
CC(1/2) | 0.999 | 0.999 | 0.827 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.3 | 303 | 1.61 M (NH4)2SO4, 0.09 M NaCl, 0.1 M MES pH 6.3 |