5NCI
GriE in complex with cobalt, alpha-ketoglutarate and l-leucine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-04-10 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00003 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 148.720, 56.061, 73.534 |
Unit cell angles | 90.00, 111.95, 90.00 |
Refinement procedure
Resolution | 68.968 - 1.755 |
R-factor | 0.1412 |
Rwork | 0.140 |
R-free | 0.16930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5nch |
RMSD bond length | 0.011 |
RMSD bond angle | 1.038 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (dev_2689) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 68.968 | 1.785 |
High resolution limit [Å] | 1.755 | 1.755 |
Rmerge | 0.094 | 0.852 |
Rpim | 0.039 | 0.342 |
Number of reflections | 55874 | 2782 |
<I/σ(I)> | 14 | 2.2 |
Completeness [%] | 99.1 | 98.1 |
Redundancy | 6.9 | 7.1 |
CC(1/2) | 0.998 | 0.734 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.3 | 293 | 24.8 % PEG 4000, 16.1 % PEG 200 and 0.1 M HEPES/NaOH pH 7.3 Co-crystallization with: 10 mM L-leucine, 10 mM alpha-ketoglutarate, 10 mM DTT, 1 mM CoCl2, 2 mM Na-ascorbate. |