5MZP
Crystal structure of stabilized A2A adenosine receptor A2AR-StaR2-bRIL in complex with caffeine at 2.1A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-03-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.96862 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 39.442, 179.870, 139.640 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.527 - 2.100 |
R-factor | 0.1967 |
Rwork | 0.196 |
R-free | 0.21990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5iu4 |
RMSD bond length | 0.027 |
RMSD bond angle | 0.953 |
Data reduction software | XDS (v1.0) |
Data scaling software | Aimless (6.5.019) |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 89.940 | 2.160 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.130 | 0.977 |
Rpim | 0.532 | |
Number of reflections | 29678 | 2379 |
<I/σ(I)> | 8.2 | 1.4 |
Completeness [%] | 98.7 | 99.9 |
Redundancy | 4.8 | 4.9 |
CC(1/2) | 0.996 | 0.454 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 5.5 | 293 | 0.1M MES PH 5.5, 0.2M K/NA TARTRATE, 27.5-40% PEG400, 0.5-1% (V/V) (+/-)-2-METHYL-2,4-PENTANEDIOL |