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5MZP

Crystal structure of stabilized A2A adenosine receptor A2AR-StaR2-bRIL in complex with caffeine at 2.1A resolution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2016-03-25
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.96862
Spacegroup nameC 2 2 21
Unit cell lengths39.442, 179.870, 139.640
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.527 - 2.100
R-factor0.1967
Rwork0.196
R-free0.21990
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5iu4
RMSD bond length0.027
RMSD bond angle0.953
Data reduction softwareXDS (v1.0)
Data scaling softwareAimless (6.5.019)
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX ((1.10.1_2155: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]89.9402.160
High resolution limit [Å]2.1002.100
Rmerge0.1300.977
Rpim0.532
Number of reflections296782379
<I/σ(I)>8.21.4
Completeness [%]98.799.9
Redundancy4.84.9
CC(1/2)0.9960.454
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1LIPIDIC CUBIC PHASE5.52930.1M MES PH 5.5, 0.2M K/NA TARTRATE, 27.5-40% PEG400, 0.5-1% (V/V) (+/-)-2-METHYL-2,4-PENTANEDIOL

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PDB entries from 2024-05-15

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