5MG9
Putative Ancestral Mamba toxin 1 (AncTx1-W28R/I38S)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-01-29 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.965 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 41.057, 41.057, 67.118 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 35.556 - 1.801 |
R-factor | 0.2056 |
Rwork | 0.203 |
R-free | 0.23650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4iye |
RMSD bond length | 0.004 |
RMSD bond angle | 0.809 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.556 | 1.910 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.111 | 1.530 |
Number of reflections | 11687 | |
<I/σ(I)> | 12.24 | 1.16 |
Completeness [%] | 100.0 | 100 |
Redundancy | 8.3 | 8.2 |
CC(1/2) | 0.999 | 0.719 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | Protein: lyophilized synthetic toxin at 5 mg/mL in 1 M Na Acetate pH 5.5. Precipitant: 1.9 M ammonium sulfate, 4 % MPD, 2 % 1,4-dioxane, 2 % gamma-valerolactone, 0.132 M sodium citrate, pH 5.5. Cryoprotectant: 80% saturated lithium sulfate, 10% Dioxane, 10% gamma-valerolactone |