5M5T
Clathrin heavy chain N-terminal domain bound to a non-natural clathrin-box motif peptide (Amph4T1)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-01-24 |
| Detector | DECTRIS PILATUS 6M-F |
| Wavelength(s) | 0.91742 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 137.810, 130.970, 79.120 |
| Unit cell angles | 90.00, 116.17, 90.00 |
Refinement procedure
| Resolution | 33.590 - 1.700 |
| R-factor | 0.15927 |
| Rwork | 0.158 |
| R-free | 0.18507 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1c9i |
| RMSD bond length | 0.014 |
| RMSD bond angle | 1.619 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 33.600 | 1.740 |
| High resolution limit [Å] | 1.700 | 1.700 |
| Rmerge | 0.055 | 0.751 |
| Number of reflections | 128743 | |
| <I/σ(I)> | 13.1 | 1.6 |
| Completeness [%] | 98.2 | 94.5 |
| Redundancy | 3.9 | 3.4 |
| CC(1/2) | 0.999 | 0.564 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 1 uL protein:peptide mix (14 mg/mL NTD and 3.4 mM peptide) plus 1 uL reservoir equilibrated against a 200 uL reservoir of 1.1 M sodium malonate pH 8.0 |
