Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5M43

Crystal structure of Yvh1 phosphatase domain from Chaetomium thermophilum

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-2
Synchrotron siteESRF
BeamlineID23-2
Temperature [K]100
Detector technologyPIXEL
Collection date2014-04-30
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)0.8726
Spacegroup nameP 43 21 2
Unit cell lengths88.758, 88.758, 53.079
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.379 - 1.646
R-factor0.1644
Rwork0.163
R-free0.18680
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1wrm
RMSD bond length0.017
RMSD bond angle1.373
Data reduction softwareXDS
Data scaling softwareAimless (0.5.17)
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.10.1_2155: ???)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.5501.670
High resolution limit [Å]1.6461.650
Rmerge0.0560.620
Number of reflections25830
<I/σ(I)>20.6
Completeness [%]98.593.5
Redundancy8.68.2
CC(1/2)0.9990.916
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2910.2 M LiNO3 20% PEG3350

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon