5M1P
Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Calcium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-18 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 43.453, 53.597, 69.852 |
Unit cell angles | 90.00, 91.80, 90.00 |
Refinement procedure
Resolution | 43.430 - 1.100 |
R-factor | 0.2229 |
Rwork | 0.222 |
R-free | 0.23480 |
Structure solution method | SAD |
RMSD bond length | 0.007 |
RMSD bond angle | 1.240 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.430 | 43.430 | 1.120 |
High resolution limit [Å] | 1.100 | 6.020 | 1.100 |
Rmerge | 0.078 | 0.046 | 0.970 |
Rmeas | 0.094 | ||
Rpim | 0.052 | ||
Total number of observations | 409240 | ||
Number of reflections | 129065 | ||
<I/σ(I)> | 6.5 | ||
Completeness [%] | 99.4 | 99.3 | 99.4 |
Redundancy | 3.2 | 3.4 | 3 |
CC(1/2) | 0.996 | 0.994 | 0.401 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M Ammonium Tartrate, 0.1 M Bis-tris pH 5.5-6.5, 20% PEG 3350 |