5LD5
Crystal structure of a bacterial dehydrogenase at 2.19 Angstroms resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 71.390, 132.110, 85.320 |
Unit cell angles | 90.00, 104.88, 90.00 |
Refinement procedure
Resolution | 47.714 - 2.191 |
R-factor | 0.1797 |
Rwork | 0.177 |
R-free | 0.22660 |
Structure solution method | SAD |
RMSD bond length | 0.008 |
RMSD bond angle | 1.097 |
Data reduction software | XDS (March 1, 2015) |
Data scaling software | Aimless (0.5.26) |
Phasing software | PHASER (2.6.1) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.714 | 2.269 |
High resolution limit [Å] | 2.191 | 2.191 |
Rmerge | 0.116 | 0.822 |
Number of reflections | 77410 | |
<I/σ(I)> | 9.46 | 2.01 |
Completeness [%] | 99.0 | 90 |
Redundancy | 6.7 | 6.4 |
CC(1/2) | 0.997 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1 M sodium citrate pH 5.5, 20% PEG 3000 |