Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5KRG

RNA 15mer duplex binding with PZG monomer

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.2
Synchrotron siteALS
Beamline8.2.2
Temperature [K]99
Detector technologyCCD
Collection date2016-01-26
DetectorMAR CCD 165 mm
Wavelength(s)0.97
Spacegroup nameP 3
Unit cell lengths44.046, 44.046, 84.516
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution42.258 - 1.600
R-factor0.20711
Rwork0.206
R-free0.23384
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4nfo
RMSD bond length0.024
RMSD bond angle2.656
Data reduction softwareHKL-2000 (2000)
Data scaling softwareHKL-2000 (2000)
Phasing softwarePHASER (2.5.6)
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.660
High resolution limit [Å]1.6001.600
Rmerge0.1100.270
Number of reflections21914
<I/σ(I)>11.92.18
Completeness [%]95.671.3
Redundancy4.51.6
CC(1/2)0.9660.941
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72910.01 M Magnesium chloride hexahydrate, 0.05 M HEPES sodium pH 7.0, 4.0 M Lithium chloride

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon