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5KPF

Crystal structure of cytochrome c - Phenyl-trisulfonatocalix[4]arene complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 2
Synchrotron siteSOLEIL
BeamlinePROXIMA 2
Temperature [K]100
Detector technologyCCD
Collection date2015-07-16
DetectorADSC QUANTUM 315r
Wavelength(s)0.9786
Spacegroup nameC 2 2 21
Unit cell lengths34.417, 61.085, 173.403
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.351 - 1.698
R-factor0.1604
Rwork0.158
R-free0.20700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3tyi
RMSD bond length0.010
RMSD bond angle1.127
Data reduction softwareXDS
Data scaling softwareSCALA (3.3.22)
Phasing softwarePHASER (2.5.7)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]86.70143.3511.790
High resolution limit [Å]1.6985.3701.700
Rmerge0.0581.214
Rmeas0.1520.0631.315
Rpim0.0570.0250.499
Total number of observations145765485319653
Number of reflections20722
<I/σ(I)>9.1221.5
Completeness [%]99.799.998.1
Redundancy76.46.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293.1520 mM PEG 3350, 200 mM Ammonium Nitrate pH 6.3 cyt c-sclx4 seed (grown in 18% PEG 8000, 50 mM NaCl, 100 mM MgCl2, 50 mM NaOAc pH 5.6)

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PDB entries from 2024-05-15

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