Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5KMN

TrkA JM-kinase with 1-(2-methyl-4-phenyl-pyrimidin-5-yl)-3-[[2-(trifluoromethyl)phenyl]methyl]urea

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2012-10-26
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.000
Spacegroup nameP 31 1 2
Unit cell lengths52.150, 52.150, 228.530
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution44.300 - 2.140
R-factor0.1951
Rwork0.194
R-free0.22230
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.010
RMSD bond angle1.010
Data reduction softwareXDS
Data scaling softwareSCALA (3.3.16)
Phasing softwareBUSTER
Refinement softwareBUSTER-TNT
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]44.30044.3042.250
High resolution limit [Å]2.1366.7502.140
Rmerge0.1030.515
Rmeas0.1550.1150.569
Rpim0.0490.0390.179
Total number of observations201423638729577
Number of reflections20356
<I/σ(I)>11.920.64.3
Completeness [%]100.099.7100
Redundancy9.98.910
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.529850mM MES pH 6.5, 150 mM NaCl, 5mM TCEP, 0.1% beta-OctylGlucoside

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon