5JSP
New Mechanistic Insight from Substrate and Product Bound Structures of the Metal-dependent Dimethylsulfoniopropionate Lyase DddQ
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-11-20 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.979332 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 48.745, 88.101, 92.998 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.769 - 2.200 |
R-factor | 0.1916 |
Rwork | 0.190 |
R-free | 0.22780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4la2 |
RMSD bond length | 0.016 |
RMSD bond angle | 0.914 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.769 | 38.769 | 2.320 |
High resolution limit [Å] | 2.200 | 6.960 | 2.200 |
Rmerge | 0.036 | 0.263 | |
Rmeas | 0.096 | 0.043 | 0.308 |
Rpim | 0.036 | 0.017 | 0.114 |
Total number of observations | 150584 | 4463 | 21811 |
Number of reflections | 20992 | ||
<I/σ(I)> | 17 | 33.5 | 7.1 |
Completeness [%] | 99.9 | 98.3 | 99.8 |
Redundancy | 7.2 | 6.1 | 7.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1 M Bis-Tris propane pH 6.5, 0.2 M NaBr, 21% PEG 3350 |