5JIE
Crystal structure of the Orsay virus delta protein N-terminal fragment (aa 1~66)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-02-12 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97853 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 175.013, 32.133, 65.648 |
Unit cell angles | 90.00, 99.71, 90.00 |
Refinement procedure
Resolution | 48.018 - 2.137 |
R-factor | 0.2077 |
Rwork | 0.206 |
R-free | 0.23140 |
Structure solution method | SAD |
RMSD bond length | 0.008 |
RMSD bond angle | 0.846 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | AutoSol |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.180 |
High resolution limit [Å] | 2.137 | 5.810 | 2.137 |
Rmerge | 0.122 | 0.049 | 0.583 |
Number of reflections | 19535 | ||
<I/σ(I)> | 6.3 | ||
Completeness [%] | 95.9 | 99.3 | 76.5 |
Redundancy | 4.3 | 4.3 | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 1.6 M ammonium sulfate, 0.1 M MES monohydrate (pH 6.5), and 12% v/v dioxane | |
2 | EVAPORATION | 293 | 0.1 M citric acid (pH 5.0) and 14% (w/v) PEG 6,000 |