5JCK
Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-10 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97954 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 81.473, 81.473, 121.357 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.000 |
R-factor | 0.1474 |
Rwork | 0.144 |
R-free | 0.20870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4h4q |
RMSD bond length | 0.024 |
RMSD bond angle | 2.225 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.030 |
High resolution limit [Å] | 2.000 | 5.430 | 2.000 |
Rmerge | 0.145 | 0.089 | 0.355 |
Total number of observations | 751594 | ||
Number of reflections | 53422 | ||
<I/σ(I)> | 5.7 | ||
Completeness [%] | 99.7 | 95.7 | 100 |
Redundancy | 14.1 | 12.3 | 14.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | Tris, lithium sulfate, PEG 5000 MME |