5J7Z
Crystal structure of endoglycoceramidase I from Rhodococ-cus equi in complex with GM1
Replaces: 5DVGExperimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL17U |
| Synchrotron site | SSRF |
| Beamline | BL17U |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2015-09-17 |
| Detector | ADSC QUANTUM 315 |
| Wavelength(s) | 0.979 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 192.283, 48.921, 120.227 |
| Unit cell angles | 90.00, 113.95, 90.00 |
Refinement procedure
| Resolution | 50.000 - 2.150 |
| R-factor | 0.169 |
| Rwork | 0.167 |
| R-free | 0.20300 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5ccu |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.458 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 2.230 |
| High resolution limit [Å] | 2.150 | 2.150 |
| Rmerge | 0.118 | 0.485 |
| Rpim | 0.269 | |
| Number of reflections | 55310 | |
| <I/σ(I)> | 13.25 | |
| Completeness [%] | 99.2 | |
| Redundancy | 4.2 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 294 | PEG800 SODIUM HYDROXIDE AMMONIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K |
