Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5J7A

Bacteriorhodopsin ground state structure obtained with Serial Femtosecond Crystallography

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeFREE ELECTRON LASER
Source detailsSLAC LCLS BEAMLINE CXI
Synchrotron siteSLAC LCLS
BeamlineCXI
Temperature [K]293
Detector technologyPIXEL
Collection date2014-06-29
DetectorCS-PAD CXI-2
Wavelength(s)1.83
Spacegroup nameP 63
Unit cell lengths62.000, 62.000, 110.000
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution21.660 - 2.300
R-factor0.1926
Rwork0.191
R-free0.21810
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1h68
RMSD bond length0.008
RMSD bond angle1.165
Data reduction softwareCrystFEL (0.6.1)
Data scaling softwareCrystFEL (0.6.1)
Phasing softwarePHASER (2.5.6)
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]21.9002.410
High resolution limit [Å]2.3002.300
Number of reflections11027
<I/σ(I)>6.561.58
Completeness [%]100.099.86
Redundancy16316.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1LIPIDIC CUBIC PHASE5.6293Precipitant: 29%-38% PEG 2000, 100 mM phosphate buffer pH 5.6. MAG 9.9 used for LCP formation. Crystallization setup in Hamilton syringe with tube of LCP surrounded by precipitant.

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon