5J2Q
HIV-1 reverse transcriptase in complex with DNA that has incorporated a mismatched EFdA-MP at the N-(pre-translocation) site
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 4.2.2 |
| Synchrotron site | ALS |
| Beamline | 4.2.2 |
| Temperature [K] | 100 |
| Detector technology | CMOS |
| Collection date | 2014-07-30 |
| Detector | RDI CMOS_8M |
| Wavelength(s) | 1.000 |
| Spacegroup name | C 2 2 21 |
| Unit cell lengths | 165.557, 170.512, 102.235 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 64.330 - 2.789 |
| R-factor | 0.2138 |
| Rwork | 0.212 |
| R-free | 0.25200 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | pdbid 5J2M |
| RMSD bond length | 0.002 |
| RMSD bond angle | 0.467 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.1.29) |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 64.330 | 64.330 | 2.910 |
| High resolution limit [Å] | 2.790 | 9.660 | 2.790 |
| Rmerge | 0.079 | 0.022 | 0.992 |
| Rmeas | 0.085 | 0.023 | 1.067 |
| Rpim | 0.031 | 0.009 | 0.390 |
| Total number of observations | 269604 | 6337 | 31561 |
| Number of reflections | 36351 | ||
| <I/σ(I)> | 21.5 | 73.3 | 1.9 |
| Completeness [%] | 99.7 | 98 | 97.8 |
| Redundancy | 7.4 | 6.7 | 7.3 |
| CC(1/2) | 0.999 | 1.000 | 0.812 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6 | 291.1 | 8% PEG4000, 25mM MES pH 6.0, 5mM magnesium sulfate |
