5J26
Crystal structure of a 53BP1 Tudor domain in complex with a ubiquitin variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 93.15 |
Detector technology | IMAGE PLATE |
Collection date | 2012-10-15 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.531, 47.768, 94.237 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.593 - 2.505 |
R-factor | 0.237 |
Rwork | 0.231 |
R-free | 0.28700 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.701 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX (1.9_1692) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.593 | 2.650 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.071 | 0.399 |
Number of reflections | 6047 | |
<I/σ(I)> | 11.46 | 1.75 |
Completeness [%] | 87.6 | 49.1 |
Redundancy | 1.75 | 1.16 |
CC(1/2) | 0.996 | 0.782 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 0.1 M Sodium Cacodylate pH 6.0, 0.2 M Sodium Acetate, 27% (w/v) PEG8000 |