5IFU
Crystal Structure of Prolyl-tRNA synthetase (ProRS, Proline--tRNA ligase) from Plasmodium falciparum in complex with Glyburide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-10-13 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.979490 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 138.310, 138.310, 156.660 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.737 - 2.450 |
R-factor | 0.1863 |
Rwork | 0.185 |
R-free | 0.21290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4q15 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.668 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (dev_1819) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.737 | 43.737 | 2.510 |
High resolution limit [Å] | 2.450 | 10.960 | 2.450 |
Rmerge | 0.066 | 0.026 | 0.533 |
Number of reflections | 56139 | ||
<I/σ(I)> | 18.69 | 38 | 4.15 |
Completeness [%] | 99.5 | 90.5 | 100 |
Redundancy | 7.5 | ||
CC(1/2) | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 289 | at 22mg/ml, incubated with 5mM glyburide, then 1:1 with Morpheus(g2): 10% PEG-8000, 20% ethylene glycol, 0.1M MES/imidazole, pH=6.5, 0.03M each sodium formate, ammonium acetate, trisodium citrate, sodium potassium tartrate, sodium oxamate |