Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5IEO

Structure of CDL2.3a, a computationally designed Vitamin-D3 binder

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2015-01-07
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.54
Spacegroup nameP 41 21 2
Unit cell lengths71.132, 71.132, 62.119
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution31.811 - 1.851
R-factor0.1636
Rwork0.161
R-free0.19130
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3hx8
RMSD bond length0.008
RMSD bond angle1.188
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER (2.5.6)
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.920
High resolution limit [Å]1.8503.9901.850
Rmerge0.0590.0450.236
Rmeas0.063
Rpim0.020
Total number of observations145264
Number of reflections14121
<I/σ(I)>17.6
Completeness [%]99.999.5100
Redundancy10.39.210.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52980.1 M HEPES sodium pH 7.5, 1.25 M Sodium citrate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon