5HJI
Crystal Structure of Pyrococcus abyssi Trm5a complexed with adenosine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | Cu FINE FOCUS |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-11-05 |
Detector | OXFORD ONYX CCD |
Wavelength(s) | 1.5 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.727, 54.718, 128.948 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.574 - 2.200 |
R-factor | 0.1954 |
Rwork | 0.193 |
R-free | 0.23610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5hjk |
RMSD bond length | 0.003 |
RMSD bond angle | 0.809 |
Data reduction software | CrysalisPro |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.574 | 2.320 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.129 | 0.550 |
Number of reflections | 19382 | |
<I/σ(I)> | 8 | 2.3 |
Completeness [%] | 99.2 | 98.8 |
Redundancy | 3.4 | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 10-15% PEG3350, 100mM HEPES, pH7.5, 100mM Ca(OAc)2 and 100mM KCl |