5HEB
The third PDZ domain from the synaptic protein PSD-95 in complex with a C-terminal peptide derived from CRIPT
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 289 |
Detector technology | IMAGE PLATE |
Collection date | 2012-09-12 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 41 3 2 |
Unit cell lengths | 89.771, 89.771, 89.771 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.147 - 1.650 |
R-factor | 0.1694 |
Rwork | 0.167 |
R-free | 0.19450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1be9 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.220 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10pre_2104) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.147 | 1.703 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.034 | 0.289 |
Number of reflections | 15083 | |
<I/σ(I)> | 61.571 | 2.478 |
Completeness [%] | 97.6 | 76 |
Redundancy | 13.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 289 | Peptide was included in protein buffer to a final molar ratio of 2:1 relative to protein. Reservoir solution contained 1 M sodium citrate, pH 7.0. Equal amounts (1.5 microliters) of protein (9 mg/mL) and reservoir solution were mixed and equillibrated against 500 microliters of crystallization buffer. |