5GTD
o-Succinylbenzoate CoA Synthetase (MenE) from Bacillus Subtilis in Complex with the Acyl-adenylate Intermediate OSB-AMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-09-26 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.979 |
Spacegroup name | P 43 |
Unit cell lengths | 121.814, 121.814, 98.563 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.960 - 2.690 |
R-factor | 0.2015 |
Rwork | 0.200 |
R-free | 0.23670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5bur |
RMSD bond length | 0.003 |
RMSD bond angle | 0.719 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 31.960 | 2.790 |
High resolution limit [Å] | 2.690 | 2.690 |
Rmerge | 0.083 | 0.738 |
Number of reflections | 39783 | |
<I/σ(I)> | 19.4 | 3.2 |
Completeness [%] | 99.2 | 98.75 |
Redundancy | 3.2 | |
CC(1/2) | 0.868 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.3 | 289 | 10% PEG 6000, 10.5% MPD, 0.094M HEPES pH7.3, 0.012M imidazole, 0.12M sodium acetate, 0.6% PEG8000, 0.48% ethylene glycol |