5G0Z
Structure of native granulovirus polyhedrin determined using an X-ray free-electron laser
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | FREE ELECTRON LASER |
Source details | SLAC LCLS BEAMLINE CXI |
Synchrotron site | SLAC LCLS |
Beamline | CXI |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2013-02-10 |
Detector | CORNELL-SLAC PIXEL ARRAY DETECTOR |
Wavelength(s) | 1.5600 |
Spacegroup name | I 2 3 |
Unit cell lengths | 103.400, 103.400, 103.400 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.557 - 2.001 |
R-factor | 0.1517 |
Rwork | 0.148 |
R-free | 0.18970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3jvb |
RMSD bond length | 0.006 |
RMSD bond angle | 0.739 |
Data reduction software | CrystFEL (V. 0.5.2) |
Data scaling software | CrystFEL (V. 0.5.2) |
Phasing software | PHASER |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Number of reflections | 12600 | |
<I/σ(I)> | 9.59 | 0.92 |
Completeness [%] | 100.0 | 100 |
Redundancy | 6008 | 1258 |
CC(1/2) | 0.997 | 0.677 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | IN VIVO |