5FDA
The high resolution structure of apo form dihydrofolate reductase from Yersinia pestis at 1.55 A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-12-09 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97912 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 60.265, 79.201, 64.321 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.960 - 1.549 |
R-factor | 0.1587 |
Rwork | 0.157 |
R-free | 0.19420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3q1h |
RMSD bond length | 0.009 |
RMSD bond angle | 0.973 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.580 |
High resolution limit [Å] | 1.549 | 4.210 | 1.550 |
Rmerge | 0.046 | 0.028 | 0.688 |
Rmeas | 0.050 | 0.030 | 0.796 |
Rpim | 0.018 | 0.011 | 0.391 |
Total number of observations | 166938 | ||
Number of reflections | 22728 | ||
<I/σ(I)> | 16 | ||
Completeness [%] | 99.9 | 99.7 | 98 |
Redundancy | 7.3 | 7.3 | 3.9 |
CC(1/2) | 0.997 | 0.733 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 297 | 0.1 M Sodium Acetate, 3.0 M Sodium chloride |