Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5F79

Influenza PB2 bound to an azaindole inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.1
Synchrotron siteALS
Beamline5.0.1
Temperature [K]100
Detector technologyCCD
Collection date2010-04-07
DetectorADSC QUANTUM 315r
Wavelength(s)0.9774
Spacegroup nameP 65
Unit cell lengths80.970, 80.970, 54.620
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution30.000 - 2.400
R-factor0.1694
Rwork0.168
R-free0.20260
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)4nce
RMSD bond length0.010
RMSD bond angle1.160
Data scaling softwareAimless (0.5.1)
Refinement softwareBUSTER-TNT
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]43.09043.0902.440
High resolution limit [Å]2.2605.9802.260
Rmerge0.0400.0130.558
Rpim0.0200.0070.279
Total number of observations4768926089818
Number of reflections9658
<I/σ(I)>25.972.93.2
Completeness [%]100.099.6100
Redundancy4.94.85
CC(1/2)1.0001.0000.850
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.72931 uL protein solution (2.8 mg/mL protein, 50 mM Tris, pH 8, 200 mM sodium chloride, 2 mM dithiothreitol, 1 mM anthraquinone-2,6-disulfonic acid disodium salt, 7.5 mM GTP) + 0.4 uL well solution (1.5 M sodium formate, 100 mM sodium citrate, pH 4.7, 10 mM dithiothreitol) suspended over 1 mL of well solution, crystals transferred to a soaking solution (3.25 M sodium formate, 100 mM sodium citrate, pH 4.7) containing 1 mM inhibitor, incubated approximately 15 hours at room temperature, and then transferred to a cryo-preservative solution (soaking solution with 25% v/v glycerol) prior to freezing in liquid nitrogen

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon