5ENB
Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with o-Tolylthiourea (SGC - Diamond I04-1 fragment screening)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-06-06 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9200 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 60.300, 92.170, 24.250 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.500 - 1.730 |
R-factor | 0.213 |
Rwork | 0.212 |
R-free | 0.23570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3mb3 |
RMSD bond length | 0.016 |
RMSD bond angle | 1.733 |
Data reduction software | XDS |
Data scaling software | Aimless (0.2.17) |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 22.500 | 22.500 | 1.780 |
High resolution limit [Å] | 1.730 | 7.740 | 1.730 |
Rmerge | 0.032 | 0.025 | 0.746 |
Rpim | 0.014 | 0.012 | 0.307 |
Total number of observations | 95030 | 1074 | 7043 |
Number of reflections | 14789 | ||
<I/σ(I)> | 25.5 | 67.3 | 2.6 |
Completeness [%] | 99.8 | 96.5 | 99.9 |
Redundancy | 6.4 | 5.3 | 6.7 |
CC(1/2) | 0.999 | 0.999 | 0.822 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.1M HEPES pH 7.5 , 0.15M magnesium chloride , 30% PEG3350 |