5EMK
Crystal structure of PRMT5:MEP50 with Compound 9 and sinefungin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2012-08-03 |
Detector | MAR scanner 300 mm plate |
Wavelength(s) | 1.07816 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 102.790, 137.750, 178.520 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.490 - 2.520 |
R-factor | 0.2035 |
Rwork | 0.200 |
R-free | 0.26180 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.492 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless (0.1.27) |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 54.630 | 54.630 | 2.590 |
High resolution limit [Å] | 2.520 | 11.270 | 2.520 |
Rmerge | 0.055 | 0.021 | 0.674 |
Rpim | 0.025 | 0.010 | 0.310 |
Total number of observations | 239412 | 2513 | 17734 |
Number of reflections | 42869 | ||
<I/σ(I)> | 19.4 | 54.5 | 2.4 |
Completeness [%] | 99.4 | 98.6 | 98.7 |
Redundancy | 5.6 | 4.8 | 5.7 |
CC(1/2) | 0.999 | 0.999 | 0.884 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M Sodium acetate, 0.1 M Sodium citrate pH 6.1, 10% w/v PEG 4000 |