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5EGB

Human PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA Sequence II

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2015-05-05
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths34.575, 79.221, 68.415
Unit cell angles90.00, 95.42, 90.00
Refinement procedure
Resolution29.639 - 1.977
R-factor0.1939
Rwork0.193
R-free0.21960
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Zn SAD determined structure
RMSD bond length0.009
RMSD bond angle1.092
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.6402.040
High resolution limit [Å]1.9701.970
Rmerge0.0710.712
Number of reflections22386
<I/σ(I)>25.31.9
Completeness [%]86.137.6
Redundancy7.74.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.52890.055M Bis-Tris propane, 0.045M Citric Acid, 30% PEG3350

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PDB entries from 2024-05-15

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