5EGB
Human PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA Sequence II
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-05-05 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 34.575, 79.221, 68.415 |
Unit cell angles | 90.00, 95.42, 90.00 |
Refinement procedure
Resolution | 29.639 - 1.977 |
R-factor | 0.1939 |
Rwork | 0.193 |
R-free | 0.21960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Zn SAD determined structure |
RMSD bond length | 0.009 |
RMSD bond angle | 1.092 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.640 | 2.040 |
High resolution limit [Å] | 1.970 | 1.970 |
Rmerge | 0.071 | 0.712 |
Number of reflections | 22386 | |
<I/σ(I)> | 25.3 | 1.9 |
Completeness [%] | 86.1 | 37.6 |
Redundancy | 7.7 | 4.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 289 | 0.055M Bis-Tris propane, 0.045M Citric Acid, 30% PEG3350 |