5E98
Crystal structure of human heparanase in complex with HepMer M04S02a
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I02 |
| Synchrotron site | Diamond |
| Beamline | I02 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2015-05-23 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.979 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.790, 71.290, 77.920 |
| Unit cell angles | 90.00, 95.06, 90.00 |
Refinement procedure
| Resolution | 38.450 - 1.630 |
| Rwork | 0.170 |
| R-free | 0.20630 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5e8m |
| RMSD bond length | 0.012 |
| RMSD bond angle | 1.748 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 38.450 | 1.670 |
| High resolution limit [Å] | 1.630 | 1.630 |
| Rmerge | 0.050 | 1.077 |
| Rpim | 0.625 | |
| Number of reflections | 61989 | 4543 |
| <I/σ(I)> | 11.7 | 1.3 |
| Completeness [%] | 99.5 | |
| Redundancy | 4 | 3.8 |
| CC(1/2) | 0.465 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | 0.1 M MES [5.5] 0.1 M MgCl2 17% PEG3350 |
