5DYK
Crystal structure of the cGMP-dependent protein kinase PKG from Plasmodium falciparum - Apo form
Replaces: 4MYJExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-08-16 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97918 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 94.509, 127.284, 215.104 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.000 - 2.450 |
R-factor | 0.2061 |
Rwork | 0.204 |
R-free | 0.24050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4MYI |
RMSD bond length | 0.007 |
RMSD bond angle | 1.151 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 2.490 |
High resolution limit [Å] | 2.450 | 6.640 | 2.450 |
Rmerge | 0.093 | 0.031 | 0.935 |
Total number of observations | 223523 | ||
Number of reflections | 47350 | ||
<I/σ(I)> | 8.3 | ||
Completeness [%] | 96.6 | 99.4 | 93.1 |
Redundancy | 4.7 | 5.1 | 4.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 293 | 0.4M L-Proline, 10% Peg 3350, 0.1M Hepes 7.8 15% EG |