5DO6
Crystal structure of Dendroaspis polylepis venom mambalgin-1 T23A mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-06-03 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9801 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 55.900, 100.990, 53.480 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.950 - 1.697 |
R-factor | 0.1731 |
Rwork | 0.172 |
R-free | 0.20480 |
Structure solution method | SAD |
RMSD bond length | 0.006 |
RMSD bond angle | 1.017 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX (AutoSol) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.000 | 1.740 |
High resolution limit [Å] | 1.697 | 1.697 |
Rmerge | 0.061 | 0.408 |
Number of reflections | 31543 | |
<I/σ(I)> | 21.83 | 4.64 |
Completeness [%] | 97.5 | 78.7 |
Redundancy | 7.1 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.6 | 293 | Protein: redissolved from lyophilized at 5mg/ml mamb-1-T23A in 50mM Na Acetate, pH 5.5. Precipitant: 21.6% PEG600, 3.6% PEG 20K 0.18M mixed L-malic acid, MES, Tris (pH4) and mixed sodium Malonate, imidazole, boric acid(pH10) in the ratio 40:60. Cryoprotectant: 30% MPEG 550, 40% CryoProtX cryomix9, 10% NaAc pH 6.5, 0.1M potassium iodide soaked for 1 min. |