5DLT
Crystal structure of Autotaxin (ENPP2) with 7-alpha-hydroxycholesterol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2011-08-30 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97935 |
Spacegroup name | P 1 |
Unit cell lengths | 53.671, 63.482, 70.715 |
Unit cell angles | 98.72, 105.80, 99.97 |
Refinement procedure
Resolution | 44.020 - 1.600 |
R-factor | 0.1725 |
Rwork | 0.171 |
R-free | 0.19640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xr9 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.450 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0129) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.020 | 44.020 | 1.630 |
High resolution limit [Å] | 1.600 | 8.760 | 1.600 |
Rmerge | 0.065 | 0.029 | 0.868 |
Rpim | 0.061 | 0.027 | 0.815 |
Total number of observations | 205646 | 1345 | 9720 |
Number of reflections | 105202 | ||
<I/σ(I)> | 6.7 | 23.9 | 0.8 |
Completeness [%] | 92.1 | 92 | 88.9 |
Redundancy | 2 | 2.1 | 1.9 |
CC(1/2) | 0.997 | 0.996 | 0.437 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | PEG 3350, 0.1M ammonium iodide 0.3M sodium thiocyanate, 23.5mg/ml heparin sulfate |