5DJM
Structure of WT Human Glutathione Transferase in complex with cisplatin in the absence of glutathione.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 14-BM-C |
Synchrotron site | APS |
Beamline | 14-BM-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2004-07-27 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 77.517, 90.130, 68.943 |
Unit cell angles | 90.00, 97.85, 90.00 |
Refinement procedure
Resolution | 27.978 - 1.900 |
R-factor | 0.2083 |
Rwork | 0.207 |
R-free | 0.23980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5gss |
RMSD bond length | 0.013 |
RMSD bond angle | 1.424 |
Data scaling software | Aimless (0.5.8) |
Phasing software | PHASER (2.5.3) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.880 | 46.880 | 1.940 |
High resolution limit [Å] | 1.900 | 9.110 | 1.900 |
Rmerge | 0.076 | 0.094 | |
Rpim | 0.030 | 0.047 | 0.327 |
Total number of observations | 268519 | 1144 | 17634 |
Number of reflections | 36278 | ||
<I/σ(I)> | 18.1 | 34.9 | 2.9 |
Completeness [%] | 98.2 | 68.3 | 98 |
Redundancy | 7.4 | 4.7 | 7.6 |
CC(1/2) | 0.998 | 0.957 | 0.862 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 100MM MES, PH 5.5, PH 6.0, 28% (W/V) PEG 8000, 20MM CACL2 10MM DTT. Soaked in 0.1MM Cisplatin for 24hrs |