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5DBB

Structure of human DNA polymerase beta Host-Guest complex with the dG base paired with a dA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2015-07-15
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.5468
Spacegroup nameP 1 21 1
Unit cell lengths54.389, 79.372, 54.938
Unit cell angles90.00, 105.45, 90.00
Refinement procedure
Resolution19.843 - 2.250
R-factor0.2086
Rwork0.206
R-free0.26450
RMSD bond length0.003
RMSD bond angle0.642
Data reduction softwareDENZO
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwarePHENIX (1.8.4_1496)
Data quality characteristics
 Overall
Low resolution limit [Å]20.000
High resolution limit [Å]2.250
Number of reflections21462
<I/σ(I)>17.9
Completeness [%]100.0
Redundancy4.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29514% to 23% PEG3400, and 350 mM sodium acetate in 50 mM imidazole (pH 7.5)

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PDB entries from 2024-05-15

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