Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5D9A

Influenza C Virus RNA-dependent RNA Polymerase - Space group P212121

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2014-07-07
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.9795
Spacegroup nameP 21 21 21
Unit cell lengths107.280, 217.500, 597.750
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.010 - 4.300
R-factor0.31839
Rwork0.316
R-free0.36847
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5d98
RMSD bond length0.009
RMSD bond angle1.241
Data reduction softwarexia2
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0124)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]80.9004.410
High resolution limit [Å]4.3004.300
Rmerge0.2040.993
Number of reflections95264
<I/σ(I)>5.51.1
Completeness [%]99.093.1
Redundancy3.32.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5293Drops were set up by mixing polymerase (5 mg/ml in 25 mM Hepes:NaOH, pH 7.5, 10% (v/v) glycerol, 0.5 M NaCl, 0.5 mM TCEP, 10 mM CaCl2) with 0.2 M NaCl, 0.1 M Na:HEPES, pH 7.5, 25% (w/v) PEG4000 and microseeds in a 2:1:1 protein:precipitant:seed ratio.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon