5D3T
First bromodomain of BRD4 bound to inhibitor XD47
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-03-08 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.440, 42.730, 79.500 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 13.200 - 1.930 |
R-factor | 0.17172 |
Rwork | 0.169 |
R-free | 0.20136 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.325 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER (2.5.6) |
Refinement software | REFMAC (5.8.0071) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 13.200 | 1.920 |
High resolution limit [Å] | 1.830 | 1.820 |
Rmerge | 0.070 | 0.333 |
Number of reflections | 12248 | |
<I/σ(I)> | 11.1 | 2.7 |
Completeness [%] | 99.1 | 96.5 |
Redundancy | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | PEG3350, succinic acid |