5D3R
First bromodomain of BRD4 bound to inhibitor XD42
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-12-21 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.430, 47.460, 57.510 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 15.300 - 2.200 |
R-factor | 0.21787 |
Rwork | 0.215 |
R-free | 0.24302 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 1.199 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER (2.5.6) |
Refinement software | REFMAC (5.8.0071) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 15.300 | 2.320 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.149 | 0.451 |
Number of reflections | 6065 | |
<I/σ(I)> | 6.2 | 2.6 |
Completeness [%] | 99.2 | 99.7 |
Redundancy | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | PEG3350, Bis-tris, sodium chloride |