Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5D1K

Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2009-11-18
DetectorMAR scanner 345 mm plate
Wavelength(s)1.5418
Spacegroup nameC 1 2 1
Unit cell lengths105.470, 45.658, 67.954
Unit cell angles90.00, 118.09, 90.00
Refinement procedure
Resolution33.339 - 1.780
R-factor0.1707
Rwork0.170
R-free0.20200
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2esk
RMSD bond length0.007
RMSD bond angle1.086
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.7.3_928)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.840
High resolution limit [Å]1.7803.8301.780
Rmerge0.0570.0280.467
Number of reflections27367
<I/σ(I)>11.869.1243.013
Completeness [%]99.199.992.7
Redundancy77.35.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529220% PEG-10000, 8% ethylene glycol, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon