5D1K
Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2009-11-18 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 105.470, 45.658, 67.954 |
Unit cell angles | 90.00, 118.09, 90.00 |
Refinement procedure
Resolution | 33.339 - 1.780 |
R-factor | 0.1707 |
Rwork | 0.170 |
R-free | 0.20200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2esk |
RMSD bond length | 0.007 |
RMSD bond angle | 1.086 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.7.3_928) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.840 |
High resolution limit [Å] | 1.780 | 3.830 | 1.780 |
Rmerge | 0.057 | 0.028 | 0.467 |
Number of reflections | 27367 | ||
<I/σ(I)> | 11.8 | 69.124 | 3.013 |
Completeness [%] | 99.1 | 99.9 | 92.7 |
Redundancy | 7 | 7.3 | 5.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 292 | 20% PEG-10000, 8% ethylene glycol, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K |