5CYG
Crystal Structure of isoform 2 of uridine phosphorylase from Schistosoma mansoni APO form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2010-11-10 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 57.697, 76.277, 118.965 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.828 - 2.017 |
R-factor | 0.1982 |
Rwork | 0.196 |
R-free | 0.24390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5cyf |
RMSD bond length | 0.003 |
RMSD bond angle | 0.708 |
Data reduction software | XDS |
Data scaling software | d*TREK |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 2.140 |
High resolution limit [Å] | 2.017 | 5.810 | 2.017 |
Rmerge | 0.078 | 0.046 | 0.304 |
Rmeas | 0.092 | 0.054 | 0.369 |
Total number of observations | 114824 | ||
Number of reflections | 32883 | 1539 | 4546 |
<I/σ(I)> | 10.07 | 22.29 | 2.65 |
Completeness [%] | 93.0 | 94.9 | 81.4 |
Redundancy | 3.49 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 25% PEG2000 MME |