5BUH
Influenza PB2 bound to a hydroxymethyl azaindole inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-04-21 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0 |
Spacegroup name | P 65 |
Unit cell lengths | 81.801, 81.801, 55.598 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 26.780 - 2.550 |
R-factor | 0.1716 |
Rwork | 0.170 |
R-free | 0.19830 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.010 |
RMSD bond angle | 1.110 |
Data scaling software | autoPROC |
Refinement software | BUSTER-TNT |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 26.780 | 26.780 | 2.850 |
High resolution limit [Å] | 2.550 | 8.060 | 2.550 |
Rmerge | 0.051 | 0.025 | 0.386 |
Total number of observations | 29301 | 921 | 4101 |
Number of reflections | 6918 | ||
<I/σ(I)> | 17.1 | ||
Completeness [%] | 98.5 | 96.9 | 98 |
Redundancy | 4.2 | 4.1 | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.7 | 293 | 1 microL protein solution (2.8 mg/ml protein, 50 mM Tris buffer pH 8, 200 mM sodium chloride, 2 mM dithiothreitol, 1 mM anthraquinone-2,6-disulfonic acid disodium salt, 7.5 mM GTP) and 0.4 ?L well solution (1.5 M sodium formate, 100 mM sodium citrate buffer pH 4.7, 10 mM dithiothreitol) was suspended over 1 mL of well solution. The crystals were transferred to a soaking solution (3.25 M sodium formate, 100 mM sodium citrate buffer pH 4.7) containing 1 mM small-molecule inhibitor. Crystals were incubated approximately 15 hours t room temperature, and then transferred to a cryo-preservative solution (soaking solution with 25 % v/v glycerol) prior to freezing in liquid nitrogen. |