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5BUH

Influenza PB2 bound to a hydroxymethyl azaindole inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyCCD
Collection date2010-04-21
DetectorADSC QUANTUM 315
Wavelength(s)1.0
Spacegroup nameP 65
Unit cell lengths81.801, 81.801, 55.598
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution26.780 - 2.550
R-factor0.1716
Rwork0.170
R-free0.19830
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.010
RMSD bond angle1.110
Data scaling softwareautoPROC
Refinement softwareBUSTER-TNT
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]26.78026.7802.850
High resolution limit [Å]2.5508.0602.550
Rmerge0.0510.0250.386
Total number of observations293019214101
Number of reflections6918
<I/σ(I)>17.1
Completeness [%]98.596.998
Redundancy4.24.14.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.72931 microL protein solution (2.8 mg/ml protein, 50 mM Tris buffer pH 8, 200 mM sodium chloride, 2 mM dithiothreitol, 1 mM anthraquinone-2,6-disulfonic acid disodium salt, 7.5 mM GTP) and 0.4 ?L well solution (1.5 M sodium formate, 100 mM sodium citrate buffer pH 4.7, 10 mM dithiothreitol) was suspended over 1 mL of well solution. The crystals were transferred to a soaking solution (3.25 M sodium formate, 100 mM sodium citrate buffer pH 4.7) containing 1 mM small-molecule inhibitor. Crystals were incubated approximately 15 hours t room temperature, and then transferred to a cryo-preservative solution (soaking solution with 25 % v/v glycerol) prior to freezing in liquid nitrogen.

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PDB entries from 2024-05-15

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