5B2N
Crystal structure of the light-driven chloride ion-pumping rhodopsin, ClP, from Nonlabens marinus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-05-17 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 101.580, 49.790, 75.320 |
Unit cell angles | 90.00, 130.40, 90.00 |
Refinement procedure
Resolution | 37.380 - 1.581 |
R-factor | 0.1769 |
Rwork | 0.176 |
R-free | 0.19750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5awz |
RMSD bond length | 0.006 |
RMSD bond angle | 0.868 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX ((1.10.1_2155: 000)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.380 | 1.640 | |
High resolution limit [Å] | 1.580 | 4.710 | 1.580 |
Rmerge | 0.077 | 0.033 | 0.862 |
Rmeas | 0.089 | 0.038 | 0.988 |
Total number of observations | 159713 | ||
Number of reflections | 38990 | 1530 | 6203 |
<I/σ(I)> | 11.57 | 32.37 | 1.66 |
Completeness [%] | 98.5 | 97 | 97.4 |
Redundancy | 4.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 8 | 293 | 0.1M Tris-HCl (pH 8.0), 450mM ammonium formate, 40% polyethylene glycol 200 |