5A3W
Crystal structure of human PLU-1 (JARID1B) in complex with Pyridine-2, 6-dicarboxylic Acid (PDCA)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-02-28 |
Detector | DECTRIS PILATUS 6M |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 142.102, 142.102, 152.256 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.846 - 2.000 |
R-factor | 0.1858 |
Rwork | 0.184 |
R-free | 0.21610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 51AF |
RMSD bond length | 0.008 |
RMSD bond angle | 1.111 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | CCP4-AUTOMR |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.850 | 2.110 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.130 | 0.940 |
Number of reflections | 61492 | |
<I/σ(I)> | 15.7 | 3.7 |
Completeness [%] | 99.9 | 100 |
Redundancy | 19.9 | 19.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 8 | 0.1M HEPES PH 8.0, 0.8M POTASSIUM PHOSPHATE-DIBASIC, 0.8M SODIUM PHOSPHATE MONOBASIC |