4ZQD
Crystal Structure of the Heterodimeric HIF-2a:ARNT Complex with the Benzoxadiazole Antagonist 0X3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-15 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97929 |
Spacegroup name | P 1 |
Unit cell lengths | 49.123, 76.334, 97.985 |
Unit cell angles | 89.91, 89.99, 73.18 |
Refinement procedure
Resolution | 48.992 - 2.870 |
R-factor | 0.2179 |
Rwork | 0.212 |
R-free | 0.25420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zp4 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.592 |
Data scaling software | SCALEPACK |
Phasing software | HKL-3000 |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.920 |
High resolution limit [Å] | 2.870 | 7.780 | 2.870 |
Rmerge | 0.121 | 0.104 | 0.747 |
Rmeas | 0.151 | 0.129 | 0.958 |
Rpim | 0.089 | 0.074 | 0.590 |
Total number of observations | 77269 | ||
Number of reflections | 30404 | ||
<I/σ(I)> | 10.3 | ||
Completeness [%] | 97.9 | 98.3 | 91.1 |
Redundancy | 2.5 | 2.6 | 2.2 |
CC(1/2) | 0.968 | 0.444 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 289 | 2% Tacsimate, pH 7.0, 6% PEG3350 |