4ZML
Crystal structure of human P-cadherin (ss-dimer)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-04 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 118.950, 80.910, 49.180 |
Unit cell angles | 90.00, 105.75, 90.00 |
Refinement procedure
Resolution | 40.460 - 1.850 |
R-factor | 0.19621 |
Rwork | 0.195 |
R-free | 0.21775 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zmn |
RMSD bond length | 0.016 |
RMSD bond angle | 1.764 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.460 | 1.950 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.066 | 0.635 |
Number of reflections | 38255 | |
<I/σ(I)> | 14.5 | 2.6 |
Completeness [%] | 99.9 | 100 |
Redundancy | 5.5 | 5.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 31% PEG 400 15 mM CaCl2 5% glycerol |