4Z7R
The 1.98-angstrom crystal structure of Zn(2+)-bound PqqB from Methylobacterium extorquens
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 108 |
Detector technology | CCD |
Collection date | 2014-02-22 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.431, 51.991, 120.536 |
Unit cell angles | 90.00, 95.49, 90.00 |
Refinement procedure
Resolution | 21.788 - 1.982 |
R-factor | 0.1771 |
Rwork | 0.175 |
R-free | 0.22120 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.794 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.5.1) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.010 |
High resolution limit [Å] | 1.980 | 5.370 | 1.980 |
Rmerge | 0.115 | 0.055 | 0.450 |
Rmeas | 0.140 | 0.067 | 0.582 |
Rpim | 0.078 | 0.038 | 0.366 |
Total number of observations | 117845 | ||
Number of reflections | 38935 | ||
<I/σ(I)> | 9.3 | ||
Completeness [%] | 99.4 | 96.9 | 96.9 |
Redundancy | 3 | 3 | 2.1 |
CC(1/2) | 0.990 | 0.706 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.7 | 298 | 20% PEG8000, 0.2M NaCl, Bis-Tris Propane pH7.0 |