4Z67
The 1.5-angstrom crystal structure of Mn(2+)-bound PqqB from Pseudomonas Putida
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 108 |
Detector technology | PIXEL |
Collection date | 2014-02-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.987 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 86.327, 86.327, 107.064 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.350 - 1.500 |
R-factor | 0.1444 |
Rwork | 0.143 |
R-free | 0.17430 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.016 |
RMSD bond angle | 1.602 |
Data reduction software | XDS |
Data scaling software | Aimless (0.2.17) |
Phasing software | PHASER (2.5.1) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.350 | 29.350 | 1.520 |
High resolution limit [Å] | 1.500 | 8.200 | 1.500 |
Rmerge | 0.065 | 0.038 | 0.914 |
Rpim | 0.023 | 0.014 | 0.464 |
Total number of observations | 567404 | 3805 | 14105 |
Number of reflections | 65627 | ||
<I/σ(I)> | 19 | 43.9 | 1.5 |
Completeness [%] | 99.7 | 97.5 | 96 |
Redundancy | 8.6 | 7.9 | 4.6 |
CC(1/2) | 0.999 | 0.999 | 0.439 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.7 | 298 | 11% PEG4000, 0.2M NaCl, 1 mM MnCl2, 1 mM Malic acid, 0.1M Bis-Tris Propane pH6.7 |