4Z60
The 2.5-angstrom of crystal structure of Zn(2+)-bound PqqB from Pseudomonas Putida
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 108 |
Detector technology | CCD |
Collection date | 2014-02-22 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 86.186, 86.186, 107.224 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.311 - 2.500 |
R-factor | 0.1637 |
Rwork | 0.161 |
R-free | 0.21310 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.806 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.5.1) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.540 |
High resolution limit [Å] | 2.500 | 6.760 | 2.500 |
Rmerge | 0.105 | 0.041 | 0.518 |
Rmeas | 0.112 | 0.043 | 0.557 |
Rpim | 0.037 | 0.015 | 0.200 |
Total number of observations | 126826 | ||
Number of reflections | 14603 | ||
<I/σ(I)> | 8.2 | ||
Completeness [%] | 99.9 | 99.8 | 100 |
Redundancy | 8.7 | 8.6 | 7.5 |
CC(1/2) | 0.999 | 0.809 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.7 | 298 | 11% PEG4000, 0.2M NaCl, 40uM ZnCl2, 0.1M Bis-Tris Propane |